Detail information of JCDBG00020

JCDBG00020
ID
JCDBG00020
Name
petN
Type
protein_coding
Scaffold
NC_012224.1
Start
30761
End
30850
Strand
+
Link
Genbank id:7564842
Molecular function
GO:0045158 | electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
Cellular component
GO:0009512 | cytochrome b6f complex
Biological process
GO:0017004 | cytochrome complex assembly
KEGG
Source
RefSeq
TF
Description
Sequence
TGGATATAGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGAAGAAGT GGACTCTAGG
Gene structure

JCDB Genes gff download

JCDBG00020 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

Mouse click the small gray square will display sample information.

JCDBG00020's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network
node1node2typescc
JCDBG00020JCDBG00064co-exp0.899486
JCDBG00020JCDBG00043co-exp0.888094
JCDBG00020JCDBG00013co-exp0.882966
JCDBG00020JCDBG00029co-exp0.868454
JCDBG00020JCDBG04310co-exp-0.841093
JCDBG00020JCDBG21815co-exp-0.839173
JCDBG00020JCDBG18778co-exp-0.834029
JCDBG00020JCDBG07513co-exp-0.832561
JCDBG00020JCDBG22065co-exp-0.831504
JCDBG00020JCDBG02311co-exp-0.828467
JCDBG00064JCDBG00043co-exp0.912455
JCDBG00064JCDBG00013co-exp0.907456
JCDBG00064JCDBG00029co-exp0.87883
JCDBG00064JCDBG04310co-exp-0.785794
JCDBG00064JCDBG21815co-exp-0.777888
JCDBG00064JCDBG18778co-exp-0.7511
JCDBG00064JCDBG07513co-exp-0.780254
JCDBG00064JCDBG22065co-exp-0.741691
JCDBG00064JCDBG02311co-exp-0.763911
JCDBG00043JCDBG00013co-exp0.958265
JCDBG00043JCDBG00029co-exp0.950823
JCDBG00043JCDBG04310co-exp-0.735135
JCDBG00043JCDBG21815co-exp-0.763704
JCDBG00043JCDBG18778co-exp-0.730135
JCDBG00043JCDBG07513co-exp-0.743777
JCDBG00043JCDBG22065co-exp-0.691746
JCDBG00043JCDBG02311co-exp-0.78963
JCDBG00013JCDBG00029co-exp0.954387
JCDBG00013JCDBG04310co-exp-0.757883
JCDBG00013JCDBG21815co-exp-0.744441
JCDBG00013JCDBG18778co-exp-0.716064
JCDBG00013JCDBG07513co-exp-0.748127
JCDBG00013JCDBG22065co-exp-0.680378
JCDBG00013JCDBG02311co-exp-0.759942
JCDBG00029JCDBG04310co-exp-0.698294
JCDBG00029JCDBG21815co-exp-0.727027
JCDBG00029JCDBG18778co-exp-0.694365
JCDBG00029JCDBG07513co-exp-0.717638
JCDBG00029JCDBG22065co-exp-0.650272
JCDBG00029JCDBG02311co-exp-0.71763
JCDBG04310JCDBG21815co-exp0.837898
JCDBG04310JCDBG18778co-exp0.804704
JCDBG04310JCDBG07513co-exp0.833603
JCDBG04310JCDBG22065co-exp0.856881
JCDBG04310JCDBG02311co-exp0.828314
JCDBG21815JCDBG18778co-exp0.912677
JCDBG21815JCDBG07513co-exp0.866836
JCDBG21815JCDBG22065co-exp0.886671
JCDBG21815JCDBG02311co-exp0.874272
JCDBG18778JCDBG07513co-exp0.933009
JCDBG18778JCDBG22065co-exp0.894909
JCDBG18778JCDBG02311co-exp0.861563
JCDBG07513JCDBG22065co-exp0.880766
JCDBG07513JCDBG02311co-exp0.86324
JCDBG22065JCDBG02311co-exp0.841003
PPI network
node1node2type
JCDBR00020
ID
JCDBR00020
Name
petN
Type
protein_coding
Scaffold
NC_012224.1
Start
30761
End
30850
Strand
+
Exon
30761-30850
Sequence
TGGATATAGTAAGTCTCGCTTGGGCTGCTTTAATGGTAGTCTTTACATTTTCCCTTTCACTCGTAGTATGGGGAAGAAGT GGACTCTAGG
Product
Source
RefSeq
Link:
JCDBP00013
ID
JCDBP00013
Parent
JCDBR00020
Name
YP_002720105.1
Scaffold
NC_012224.1
CDS
30761-30850
Strand:
+
Sequence
MDIVSLAWAALMVVFTFSLSLVVWGRSGL
Product
cytochrome b6/f complex subunit VIII
Source
RefSeq
Link
YP_002720105.1
InterProScan
IPR005497 Cytochrome b6-f complex, subunit 8
Pfam
PF03742.10 PetN Family