Detail information of JCDBG00027

JCDBG00027
ID
JCDBG00027
Name
psbC
Type
protein_coding
Scaffold
NC_012224.1
Start
38212
End
39633
Strand
+
Link
Genbank id:7564849
Molecular function
GO:0045156 | electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0016168 | chlorophyll binding
Cellular component
GO:0009521 | photosystem
GO:0016020 | membrane
GO:0009523 | photosystem II
Biological process
GO:0009772 | photosynthetic electron transport in photosystem II
GO:0019684 | photosynthesis, light reaction
GO:0009767 | photosynthetic electron transport chain
GO:0015979 | photosynthesis
KEGG
Entry: K02705
Name: psbC
Definition: photosystem II CP43 chlorophyll apoprotein
ko00195:   Photosynthesis
Source
RefSeq
TF
Description
Sequence
TGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTATCTTTAGCCGGTCGTGAC CAAGAAACTACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGAGCTCATGT AGCTCATGCTGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCGGAGAAACCAA TGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGAC ACCTTTCCATACTTTGTATCTGGCGTACTTCACTTAATTTCCTCTGCAGTATTGGGCTTTGGCGGTATTTATCATGCACT TCTGGGTCCTGAGACTCTTGAAGAATCTTTTCCATTTTTTGGTTATGTATGGAAAGATAGAAATAAAATGACAACAATTT TAGGTATTCACTTAATCTTGCTAGGTATAGGTGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGAT ACCTGGGCTCCGGGGGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATTTTTGGTTATTTACT AAAATCCCCCTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAATTGGAGGGCATGTATGGTTAG GTTCCATTTGTATACTTGGGGGAATCTGGCATATCTTAACCAAACCCTTTGCATGGGCTCGCCGTGCACTTGTATGGTCC GGAGAGGCTTACTTGTCTTATAGTTTAGGTGCTTTATCCGTTTTTGGTTTCATTGCTTGTTGCTTTGTCTGGTTCAATAA TACCGCTTATCCTAGTGAGTTTTACGGGCCTACTGGACCGGAAGCTTCTCAAGCTCAAGCTTTTACTTTTCTAGTTAGAG ATCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACCGGGTTAGGTAAATATTTAATGCGTTCGCCTACTGGA GAAGTTATTTTTGGAGGAGAAACTATGCGTTTTTGGGATCTACGTGCTCCTTGGTTAGAACCTCTAAGAGGTCCAAATGG TTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGCCGTTCCGCGGAATATATGACCCATGCGCCTT TAGGTTCGTTGAATTCTGTAGGTGGCGTAGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCT ACCTCTCATTTTGTTCTAGGGTTCTTCCTATTCGTAGGTCATTTATGGCACGCGGGAAGGGCTCGTGCAGCTGCAGCAGG ATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTAAC
Gene structure

JCDB Genes gff download

JCDBG00027 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

Mouse click the small gray square will display sample information.

JCDBG00027's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network
node1node2typescc
JCDBG00027JCDBG00026co-exp0.967986
JCDBG00027JCDBG00033co-exp0.935167
JCDBG00027JCDBG00067co-exp0.928913
JCDBG00027JCDBG00071co-exp0.925427
JCDBG00027JCDBG00002co-exp0.921385
JCDBG00027JCDBG00047co-exp0.913089
JCDBG00027JCDBG00034co-exp0.884364
JCDBG00027JCDBG10248co-exp0.854788
JCDBG00027JCDBG08355co-exp0.849217
JCDBG00027JCDBG00819co-exp0.847613
JCDBG00026JCDBG00033co-exp0.950075
JCDBG00026JCDBG00067co-exp0.902249
JCDBG00026JCDBG00071co-exp0.934561
JCDBG00026JCDBG00002co-exp0.926188
JCDBG00026JCDBG00047co-exp0.916383
JCDBG00026JCDBG00034co-exp0.863772
JCDBG00026JCDBG10248co-exp0.802094
JCDBG00026JCDBG08355co-exp0.794646
JCDBG00026JCDBG00819co-exp0.792678
JCDBG00033JCDBG00067co-exp0.87946
JCDBG00033JCDBG00071co-exp0.899852
JCDBG00033JCDBG00002co-exp0.899406
JCDBG00033JCDBG00047co-exp0.885043
JCDBG00033JCDBG00034co-exp0.902027
JCDBG00033JCDBG10248co-exp0.839281
JCDBG00033JCDBG08355co-exp0.846076
JCDBG00033JCDBG00819co-exp0.830274
JCDBG00067JCDBG00071co-exp0.921919
JCDBG00067JCDBG00002co-exp0.859833
JCDBG00067JCDBG00047co-exp0.923353
JCDBG00067JCDBG00034co-exp0.84116
JCDBG00067JCDBG10248co-exp0.837193
JCDBG00067JCDBG08355co-exp0.80333
JCDBG00067JCDBG00819co-exp0.832792
JCDBG00071JCDBG00002co-exp0.893332
JCDBG00071JCDBG00047co-exp0.937953
JCDBG00071JCDBG00034co-exp0.815403
JCDBG00071JCDBG10248co-exp0.784071
JCDBG00071JCDBG08355co-exp0.766407
JCDBG00071JCDBG00819co-exp0.765596
JCDBG00002JCDBG00047co-exp0.867959
JCDBG00002JCDBG00034co-exp0.816051
JCDBG00002JCDBG10248co-exp0.804997
JCDBG00002JCDBG08355co-exp0.792358
JCDBG00002JCDBG00819co-exp0.788253
JCDBG00047JCDBG00034co-exp0.836956
JCDBG00047JCDBG10248co-exp0.762718
JCDBG00047JCDBG08355co-exp0.754028
JCDBG00047JCDBG00819co-exp0.748857
JCDBG00034JCDBG10248co-exp0.759052
JCDBG00034JCDBG08355co-exp0.782552
JCDBG00034JCDBG00819co-exp0.758796
JCDBG10248JCDBG08355co-exp0.886626
JCDBG10248JCDBG00819co-exp0.899286
JCDBG08355JCDBG00819co-exp0.905139
PPI network
node1node2type
JCDBR00027
ID
JCDBR00027
Name
psbC
Type
protein_coding
Scaffold
NC_012224.1
Start
38212
End
39633
Strand
+
Exon
38212-39633
Sequence
TGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTATCTTTAGCCGGTCGTGAC CAAGAAACTACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACTTATCAATTTATCCGGTAAACTACTGGGAGCTCATGT AGCTCATGCTGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCGGAGAAACCAA TGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGAC ACCTTTCCATACTTTGTATCTGGCGTACTTCACTTAATTTCCTCTGCAGTATTGGGCTTTGGCGGTATTTATCATGCACT TCTGGGTCCTGAGACTCTTGAAGAATCTTTTCCATTTTTTGGTTATGTATGGAAAGATAGAAATAAAATGACAACAATTT TAGGTATTCACTTAATCTTGCTAGGTATAGGTGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGGGGCGTATATGAT ACCTGGGCTCCGGGGGGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATTTTTGGTTATTTACT AAAATCCCCCTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAATTGGAGGGCATGTATGGTTAG GTTCCATTTGTATACTTGGGGGAATCTGGCATATCTTAACCAAACCCTTTGCATGGGCTCGCCGTGCACTTGTATGGTCC GGAGAGGCTTACTTGTCTTATAGTTTAGGTGCTTTATCCGTTTTTGGTTTCATTGCTTGTTGCTTTGTCTGGTTCAATAA TACCGCTTATCCTAGTGAGTTTTACGGGCCTACTGGACCGGAAGCTTCTCAAGCTCAAGCTTTTACTTTTCTAGTTAGAG ATCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACCGGGTTAGGTAAATATTTAATGCGTTCGCCTACTGGA GAAGTTATTTTTGGAGGAGAAACTATGCGTTTTTGGGATCTACGTGCTCCTTGGTTAGAACCTCTAAGAGGTCCAAATGG TTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGCCGTTCCGCGGAATATATGACCCATGCGCCTT TAGGTTCGTTGAATTCTGTAGGTGGCGTAGCTACCGAGATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCT ACCTCTCATTTTGTTCTAGGGTTCTTCCTATTCGTAGGTCATTTATGGCACGCGGGAAGGGCTCGTGCAGCTGCAGCAGG ATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCCATGACTCCTCTTAACTAAC
Product
Source
RefSeq
Link:
JCDBP00016
ID
JCDBP00016
Parent
JCDBR00027
Name
YP_002720108.1
Scaffold
NC_012224.1
CDS
38212-39633
Strand:
+
Sequence
MKTLYSLRRFYHVETLFNGTLSLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKP MYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTI LGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWL GSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVR DQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAP LGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
Product
photosystem II 44 kDa protein
Source
RefSeq
Link
YP_002720108.1
InterProScan
IPR000932 Photosystem antenna protein-like
IPR005869 Photosystem II CP43 reaction centre protein
Pfam
PF00421.15 PSII Family