Detail information of JCDBG00034

JCDBG00034
ID
JCDBG00034
Name
psaA
Type
protein_coding
Scaffold
NC_012224.1
Start
44544
End
46796
Strand
-
Link
Genbank id:7564856 | Jatropha Genome Database ID:Jcr4S28596.10
Molecular function
GO:0046872 | metal ion binding
Cellular component
GO:0016021 | integral component of membrane
GO:0009579 | thylakoid
GO:0009522 | photosystem I
Biological process
GO:0015979 | photosynthesis
KEGG
Entry: K02689
Name: psaA
Definition: photosystem I P700 chlorophyll a apoprotein A1
ko00195:   Photosynthesis
Source
RefSeq
TF
Description
Sequence
AATGATTATTCGTTCGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCCCATCAAAACTTCTTTCGAGGAATGGG CCAGACCCGGTCATTTCTCAAGAACAATAGCTAAGGGACCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCT CACGATTTCGATAGCCATACCAGTGATTTGGAGGAGATTTCTCGAAAAGTATTTAGTGCTCATTTCGGCCAACTCTCCAT CATCTTTCTTTGGCTGAGTGGCATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTC ACATTGGACCTAGCGCCCAAGTGGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTGGGGGGGGGGTTCCGA GGAATACAAATAACCTCCGGTTTTTTTCAGCTTTGGAGAGCATCTGGAATAACTAGTGAATTACAACTGTATTGTACTGC AATTGGTGCATTGGTCTTTGCAACTTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCTGCTCCAAAATTGGCTT GGTTCCAAGATGTAGAATCTATGTTGAATCACCATTTAGCGGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGACAT CAAGTACATGTATCTTTACCAATTAACCAATTTCTAAACGCTGGGGTGGATCCTAAGGAAATCCCACTTCCTCATGAATT TATCTTGAATCGGGATCTTTTGGCTCAACTTTATCCCAGTTTTGCTGAGGGAGCAACCCCATTTTTCACCTTGAATTGGT CAAAATATTCGGAATTTCTTACTTTTCGTGGAGGATTAGATCCAGTGACTGGGGGTCTATGGCTGACCGATATTGCACAC CATCATTTAGCTATTGCAATTCTTTTCCTGATAGCGGGTCACATGTATAAGACTAACTGGGGCATTGGTCATGGTATAAA AGATATTTTAGAGGCTCATAAAGGTCCATTTACAGGTCAGGGCCATAAGGGCCTATATGAGATCCTAACAACGTCATGGC ATGCTCAATTATCTCTTAACCTAGCTATGTTAGGTTCTTTAACCATTGTTGTAGCTCACCATATGTATTCCATGCCCCCT TATCCATATTTAGCTACTGACTATGGTACACAACTGTCATTGTTCACACATCACATGTGGATTGGTGGATTTCTCATAGT TGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGTG TTCTTAGGCATCGCGATGCAATCATATCACATCTCAACTGGGTATGTATTTTTTTAGGTTTTCATAGTTTTGGTTTATAT ATTCATAATGATACCATGAGCGCTTTAGGGCGCCCTCAAGATATGTTTTCCGATACTGCTATACAATTACAACCCGTCTT TGCTCAATGGATACAAAACACCCATGCTTTAGCACCTGGTGCAACGGCTCCTGGTGCAACAGCAAGCACCAGTTTGACTT GGGGGGGTGGTGATTTAGTGGCAGTGGGTGGCAAGGTTGCTTTGTTACCAATTCCATTAGGAACCGCAGATTTTTTGGTA CATCACATTCATGCATTTACGATTCATGTGACGGTATTGATACTTCTGAAAGGAGTTCTATTTGCCCGTAGCTCTCGTTT GATACCGGATAAAGCAAATCTTGGTTTTCGTTTCCCTTGTGATGGGCCTGGAAGAGGGGGAACATGTCAAGTATCCGCTT GGGATCATGTCTTCTTAGGGTTATTTTGGATGTACAATTCCATTTCGGTTGTAATATTCCATTTCAGTTGGAAAATGCAG TCAGATGTTTGGGGTAGTATAAGTGATCAAGGGGTGGTAACTCATATCACGGGAGGAAACTTTGCACAGAGTTCCATTAC TATTAATGGATGGCTCCGCGATTTCTTATGGGCACAGGCATCCCAGGTAATTCAGTCTTATGGTTCTTCATTATCTGCAT ATGGCCTTTTTTTCCTAGGTGCTCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAGTGGTCGTGGTTATTGGCAA GAACTTATTGAATCAATCGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTAT ACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTA TTGCAGTAGGATA
Gene structure

JCDB Genes gff download

JCDBG00034 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

Mouse click the small gray square will display sample information.

JCDBG00034's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network
node1node2typescc
JCDBG00034JCDBG00033co-exp0.902027
JCDBG00034JCDBG00027co-exp0.884364
JCDBG00034JCDBG00026co-exp0.863772
JCDBG00034JCDBG00072co-exp0.849769
JCDBG00034JCDBG00067co-exp0.84116
JCDBG00034JCDBG00047co-exp0.836956
JCDBG00034JCDBG00002co-exp0.816051
JCDBG00034JCDBG00071co-exp0.815403
JCDBG00034JCDBG13270co-exp0.808841
JCDBG00034JCDBG06341co-exp0.793711
JCDBG00033JCDBG00027co-exp0.935167
JCDBG00033JCDBG00026co-exp0.950075
JCDBG00033JCDBG00072co-exp0.825452
JCDBG00033JCDBG00067co-exp0.87946
JCDBG00033JCDBG00047co-exp0.885043
JCDBG00033JCDBG00002co-exp0.899406
JCDBG00033JCDBG00071co-exp0.899852
JCDBG00033JCDBG13270co-exp0.792641
JCDBG00033JCDBG06341co-exp0.80515
JCDBG00027JCDBG00026co-exp0.967986
JCDBG00027JCDBG00072co-exp0.834429
JCDBG00027JCDBG00067co-exp0.928913
JCDBG00027JCDBG00047co-exp0.913089
JCDBG00027JCDBG00002co-exp0.921385
JCDBG00027JCDBG00071co-exp0.925427
JCDBG00027JCDBG13270co-exp0.820629
JCDBG00027JCDBG06341co-exp0.783836
JCDBG00026JCDBG00072co-exp0.818663
JCDBG00026JCDBG00067co-exp0.902249
JCDBG00026JCDBG00047co-exp0.916383
JCDBG00026JCDBG00002co-exp0.926188
JCDBG00026JCDBG00071co-exp0.934561
JCDBG00026JCDBG13270co-exp0.768853
JCDBG00026JCDBG06341co-exp0.758858
JCDBG00072JCDBG00067co-exp0.876583
JCDBG00072JCDBG00047co-exp0.861011
JCDBG00072JCDBG00002co-exp0.717616
JCDBG00072JCDBG00071co-exp0.850068
JCDBG00072JCDBG13270co-exp0.701336
JCDBG00072JCDBG06341co-exp0.727234
JCDBG00067JCDBG00047co-exp0.923353
JCDBG00067JCDBG00002co-exp0.859833
JCDBG00067JCDBG00071co-exp0.921919
JCDBG00067JCDBG13270co-exp0.760575
JCDBG00067JCDBG06341co-exp0.753378
JCDBG00047JCDBG00002co-exp0.867959
JCDBG00047JCDBG00071co-exp0.937953
JCDBG00047JCDBG13270co-exp0.685026
JCDBG00047JCDBG06341co-exp0.710475
JCDBG00002JCDBG00071co-exp0.893332
JCDBG00002JCDBG13270co-exp0.774509
JCDBG00002JCDBG06341co-exp0.75941
JCDBG00071JCDBG13270co-exp0.689732
JCDBG00071JCDBG06341co-exp0.714939
JCDBG13270JCDBG06341co-exp0.851533
PPI network
node1node2type
JCDBR00034
ID
JCDBR00034
Name
psaA
Type
protein_coding
Scaffold
NC_012224.1
Start
44544
End
46796
Strand
-
Exon
44544-46796
Sequence
AATGATTATTCGTTCGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCCCATCAAAACTTCTTTCGAGGAATGGG CCAGACCCGGTCATTTCTCAAGAACAATAGCTAAGGGACCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCT CACGATTTCGATAGCCATACCAGTGATTTGGAGGAGATTTCTCGAAAAGTATTTAGTGCTCATTTCGGCCAACTCTCCAT CATCTTTCTTTGGCTGAGTGGCATGTATTTCCACGGTGCTCGTTTTTCCAATTATGAAGCATGGCTAAGTGATCCTACTC ACATTGGACCTAGCGCCCAAGTGGTTTGGCCGATAGTGGGTCAAGAAATATTGAATGGTGATGTGGGGGGGGGGTTCCGA GGAATACAAATAACCTCCGGTTTTTTTCAGCTTTGGAGAGCATCTGGAATAACTAGTGAATTACAACTGTATTGTACTGC AATTGGTGCATTGGTCTTTGCAACTTTAATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCTGCTCCAAAATTGGCTT GGTTCCAAGATGTAGAATCTATGTTGAATCACCATTTAGCGGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGACAT CAAGTACATGTATCTTTACCAATTAACCAATTTCTAAACGCTGGGGTGGATCCTAAGGAAATCCCACTTCCTCATGAATT TATCTTGAATCGGGATCTTTTGGCTCAACTTTATCCCAGTTTTGCTGAGGGAGCAACCCCATTTTTCACCTTGAATTGGT CAAAATATTCGGAATTTCTTACTTTTCGTGGAGGATTAGATCCAGTGACTGGGGGTCTATGGCTGACCGATATTGCACAC CATCATTTAGCTATTGCAATTCTTTTCCTGATAGCGGGTCACATGTATAAGACTAACTGGGGCATTGGTCATGGTATAAA AGATATTTTAGAGGCTCATAAAGGTCCATTTACAGGTCAGGGCCATAAGGGCCTATATGAGATCCTAACAACGTCATGGC ATGCTCAATTATCTCTTAACCTAGCTATGTTAGGTTCTTTAACCATTGTTGTAGCTCACCATATGTATTCCATGCCCCCT TATCCATATTTAGCTACTGACTATGGTACACAACTGTCATTGTTCACACATCACATGTGGATTGGTGGATTTCTCATAGT TGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACTCGATACAACGATCTATTAGATCGTG TTCTTAGGCATCGCGATGCAATCATATCACATCTCAACTGGGTATGTATTTTTTTAGGTTTTCATAGTTTTGGTTTATAT ATTCATAATGATACCATGAGCGCTTTAGGGCGCCCTCAAGATATGTTTTCCGATACTGCTATACAATTACAACCCGTCTT TGCTCAATGGATACAAAACACCCATGCTTTAGCACCTGGTGCAACGGCTCCTGGTGCAACAGCAAGCACCAGTTTGACTT GGGGGGGTGGTGATTTAGTGGCAGTGGGTGGCAAGGTTGCTTTGTTACCAATTCCATTAGGAACCGCAGATTTTTTGGTA CATCACATTCATGCATTTACGATTCATGTGACGGTATTGATACTTCTGAAAGGAGTTCTATTTGCCCGTAGCTCTCGTTT GATACCGGATAAAGCAAATCTTGGTTTTCGTTTCCCTTGTGATGGGCCTGGAAGAGGGGGAACATGTCAAGTATCCGCTT GGGATCATGTCTTCTTAGGGTTATTTTGGATGTACAATTCCATTTCGGTTGTAATATTCCATTTCAGTTGGAAAATGCAG TCAGATGTTTGGGGTAGTATAAGTGATCAAGGGGTGGTAACTCATATCACGGGAGGAAACTTTGCACAGAGTTCCATTAC TATTAATGGATGGCTCCGCGATTTCTTATGGGCACAGGCATCCCAGGTAATTCAGTCTTATGGTTCTTCATTATCTGCAT ATGGCCTTTTTTTCCTAGGTGCTCATTTTGTATGGGCTTTTAGTTTAATGTTTCTATTCAGTGGTCGTGGTTATTGGCAA GAACTTATTGAATCAATCGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTAT ACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCGTTCTTCTTAGCAAGAATTA TTGCAGTAGGATA
Product
Source
RefSeq
Link:
JCDBP00020
ID
JCDBP00020
Parent
JCDBR00034
Name
YP_002720112.1
Scaffold
NC_012224.1
CDS
44544-46796
Strand:
-
Sequence
MIIRSPEPEVKILVDRDPIKTSFEEWARPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI IFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQLWRASGITSELQLYCTA IGALVFATLMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEF ILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYKTNWGIGHGIK DILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIVVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV GAAAHAAIFMVRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVF AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSII QGRAVGVTHYLLGGIATTWAFFLARIIAVG
Product
photosystem I P700 chlorophyll a apoprotein A1
Source
RefSeq
Link
YP_002720112.1
InterProScan
IPR001280 Photosystem I PsaA/PsaB
IPR006243 Photosystem I PsaA
IPR020586 Photosystem I PsaA/PsaB, conserved site
Pfam
PF00223.15 PsaA_PsaB Family