Detail information of JCDBG00094

JCDBG00094
ID
JCDBG00094
Name
rrn23
Type
rRNA
Scaffold
NC_012224.1
Start
111964
End
114772
Strand
+
Link
Genbank id:7636394
Molecular function
Cellular component
Biological process
KEGG
Source
RefSeq
TF
Description
Sequence
TCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG GAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAG AGACAACCTGGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAA ATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTG CTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGG AATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGG AAGGGTGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGC TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGC GAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTT GGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACT CGAACCCAGAGCTAGCCGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGTACATCTAGGGATAAAGCACTGTT TCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCAAG GTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATG ACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCG TAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAAT GCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCAGGGGTGGACGAAGCGGAAGCGAGAATGTCGG CTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCGCGGAGGGT GAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCC CGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCACGGTGTCCCTGCTTTTTCAGGGTAA GAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCA GGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGG GCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGG TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGAC GCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCG GCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGG GCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCT ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTTCC GGGGGGTCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGG ACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGG ACGGAGATTGGCCCTCGAGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTTGGC CTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTC CCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGG GTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGG GCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCC CACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGGAAGCCCACCCCAAGATGAGC GCTCTCCTA
Gene structure

JCDB Genes gff download

JCDBG00094 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

Mouse click the small gray square will display sample information.

JCDBG00094's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network
node1node2typescc
JCDBG00094JCDBG00091co-exp0.849606
JCDBG00094JCDBG23738co-exp0.827721
JCDBG00094JCDBG00117co-exp0.8264
JCDBG00094JCDBG02683co-exp0.808978
JCDBG00094JCDBG10309co-exp0.802823
JCDBG00094JCDBG03611co-exp0.801843
JCDBG00094JCDBG02987co-exp0.801319
JCDBG00094JCDBG22849co-exp0.799285
JCDBG00094JCDBG25122co-exp0.797591
JCDBG00094JCDBG16809co-exp0.792238
JCDBG00091JCDBG23738co-exp0.775349
JCDBG00091JCDBG00117co-exp0.831929
JCDBG00091JCDBG02683co-exp0.784213
JCDBG00091JCDBG10309co-exp0.763009
JCDBG00091JCDBG03611co-exp0.71471
JCDBG00091JCDBG02987co-exp0.754659
JCDBG00091JCDBG22849co-exp0.78783
JCDBG00091JCDBG25122co-exp0.772747
JCDBG00091JCDBG16809co-exp0.758768
JCDBG23738JCDBG00117co-exp0.75589
JCDBG23738JCDBG02683co-exp0.951427
JCDBG23738JCDBG10309co-exp0.893987
JCDBG23738JCDBG03611co-exp0.91765
JCDBG23738JCDBG02987co-exp0.918645
JCDBG23738JCDBG22849co-exp0.91299
JCDBG23738JCDBG25122co-exp0.913686
JCDBG23738JCDBG16809co-exp0.934196
JCDBG00117JCDBG02683co-exp0.756016
JCDBG00117JCDBG10309co-exp0.769539
JCDBG00117JCDBG03611co-exp0.707148
JCDBG00117JCDBG02987co-exp0.738497
JCDBG00117JCDBG22849co-exp0.738777
JCDBG00117JCDBG25122co-exp0.731911
JCDBG00117JCDBG16809co-exp0.738028
JCDBG02683JCDBG10309co-exp0.900542
JCDBG02683JCDBG03611co-exp0.928497
JCDBG02683JCDBG02987co-exp0.946097
JCDBG02683JCDBG22849co-exp0.896199
JCDBG02683JCDBG25122co-exp0.955273
JCDBG02683JCDBG16809co-exp0.956103
JCDBG10309JCDBG03611co-exp0.855841
JCDBG10309JCDBG02987co-exp0.902141
JCDBG10309JCDBG22849co-exp0.912799
JCDBG10309JCDBG25122co-exp0.872726
JCDBG10309JCDBG16809co-exp0.925885
JCDBG03611JCDBG02987co-exp0.926542
JCDBG03611JCDBG22849co-exp0.891184
JCDBG03611JCDBG25122co-exp0.926577
JCDBG03611JCDBG16809co-exp0.883779
JCDBG02987JCDBG22849co-exp0.903114
JCDBG02987JCDBG25122co-exp0.922917
JCDBG02987JCDBG16809co-exp0.949069
JCDBG22849JCDBG25122co-exp0.877107
JCDBG22849JCDBG16809co-exp0.907174
JCDBG25122JCDBG16809co-exp0.925094
PPI network
node1node2type
JCDBR00094
ID
JCDBR00094
Name
JCDBR00094
Type
Scaffold
NC_012224.1
Start
111964
End
114772
Strand
+
Exon
111964-114772
Sequence
TCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG GAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAG AGACAACCTGGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAA ATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTG CTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGG AATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGG AAGGGTGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGC TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGC GAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTT GGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACT CGAACCCAGAGCTAGCCGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGTACATCTAGGGATAAAGCACTGTT TCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCAAG GTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATG ACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCG TAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAAT GCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCAGGGGTGGACGAAGCGGAAGCGAGAATGTCGG CTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCGCGGAGGGT GAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCC CGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCACGGTGTCCCTGCTTTTTCAGGGTAA GAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCA GGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGG GCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGG TCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGAC GCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCG GCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGG GCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCT ATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTTCC GGGGGGTCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGG ACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGG ACGGAGATTGGCCCTCGAGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTTGGC CTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTC CCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGG GTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGG GCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCC CACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGGAAGCCCACCCCAAGATGAGC GCTCTCCTA
Product
rrn23
Source
RefSeq
Link: