Detail information of JCDBG00117

JCDBG00117
ID
JCDBG00117
Name
rrn23
Type
rRNA
Scaffold
NC_012224.1
Start
140816
End
143624
Strand
-
Link
Genbank id:7636405
Molecular function
Cellular component
Biological process
KEGG
Source
RefSeq
TF
Description
Sequence
GTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG GGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCA AGAGACAACCTGGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCG AAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAG TGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGT GGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAG GGAAGGGTGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGG GCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTA GCGAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGC TTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCA CTCGAACCCAGAGCTAGCCGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGTACATCTAGGGATAAAGCACTG TTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCA AGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAA TGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTG CGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAA ATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCAGGGGTGGACGAAGCGGAAGCGAGAATGTC GGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCGCGGAGG GTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGT CCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCACGGTGTCCCTGCTTTTTCAGGGT AAGAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCC CAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAG GGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGG GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTG ACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGG CGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCT GGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACC CTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTT CCGGGGGGTCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAG GGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCC GGACGGAGATTGGCCCTCGAGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTTG GCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCT TCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAA GGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGT GGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTG CCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGGAAGCCCACCCCAAGATGA GCGCTCTCC
Gene structure

JCDB Genes gff download

JCDBG00117 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

Mouse click the small gray square will display sample information.

JCDBG00117's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network
node1node2typescc
JCDBG00117JCDBG00769co-exp0.835363
JCDBG00117JCDBG00091co-exp0.831929
JCDBG00117JCDBG00094co-exp0.8264
JCDBG00117JCDBG18451co-exp0.806264
JCDBG00117JCDBG13968co-exp0.782002
JCDBG00117JCDBG10309co-exp0.769539
JCDBG00117JCDBG02683co-exp0.756016
JCDBG00117JCDBG23738co-exp0.75589
JCDBG00117JCDBG25239co-exp0.7542
JCDBG00117JCDBG04629co-exp0.753057
JCDBG00769JCDBG00091co-exp0.797494
JCDBG00769JCDBG00094co-exp0.753146
JCDBG00769JCDBG18451co-exp0.841619
JCDBG00769JCDBG13968co-exp0.71277
JCDBG00769JCDBG10309co-exp0.846051
JCDBG00769JCDBG02683co-exp0.815684
JCDBG00769JCDBG23738co-exp0.812166
JCDBG00769JCDBG25239co-exp0.831068
JCDBG00769JCDBG04629co-exp0.789674
JCDBG00091JCDBG00094co-exp0.849606
JCDBG00091JCDBG18451co-exp0.748071
JCDBG00091JCDBG13968co-exp0.725782
JCDBG00091JCDBG10309co-exp0.763009
JCDBG00091JCDBG02683co-exp0.784213
JCDBG00091JCDBG23738co-exp0.775349
JCDBG00091JCDBG25239co-exp0.74216
JCDBG00091JCDBG04629co-exp0.724491
JCDBG00094JCDBG18451co-exp0.755032
JCDBG00094JCDBG13968co-exp0.68516
JCDBG00094JCDBG10309co-exp0.802823
JCDBG00094JCDBG02683co-exp0.808978
JCDBG00094JCDBG23738co-exp0.827721
JCDBG00094JCDBG25239co-exp0.778467
JCDBG00094JCDBG04629co-exp0.764714
JCDBG18451JCDBG13968co-exp0.649531
JCDBG18451JCDBG10309co-exp0.790845
JCDBG18451JCDBG02683co-exp0.815779
JCDBG18451JCDBG23738co-exp0.809209
JCDBG18451JCDBG25239co-exp0.853141
JCDBG18451JCDBG04629co-exp0.831378
JCDBG13968JCDBG10309co-exp0.727347
JCDBG13968JCDBG02683co-exp0.685905
JCDBG13968JCDBG23738co-exp0.677789
JCDBG13968JCDBG25239co-exp0.610517
JCDBG13968JCDBG04629co-exp0.700947
JCDBG10309JCDBG02683co-exp0.900542
JCDBG10309JCDBG23738co-exp0.893987
JCDBG10309JCDBG25239co-exp0.897388
JCDBG10309JCDBG04629co-exp0.892138
JCDBG02683JCDBG23738co-exp0.951427
JCDBG02683JCDBG25239co-exp0.927549
JCDBG02683JCDBG04629co-exp0.956988
JCDBG23738JCDBG25239co-exp0.922408
JCDBG23738JCDBG04629co-exp0.911408
JCDBG25239JCDBG04629co-exp0.912561
PPI network
node1node2type
JCDBR00116
ID
JCDBR00116
Name
JCDBR00116
Type
Scaffold
NC_012224.1
Start
140816
End
143624
Strand
-
Exon
140816-143624
Sequence
GTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCG GGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCA AGAGACAACCTGGCGAACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCG AAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAG TGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGT GGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAG GGAAGGGTGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGG GCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTA GCGAAAGCGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGC TTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCA CTCGAACCCAGAGCTAGCCGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGTACATCTAGGGATAAAGCACTG TTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTCA AGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAA TGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTG CGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAA ATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCCGCGCGAGCAGGGGTGGACGAAGCGGAAGCGAGAATGTC GGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCGCGGAGG GTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGT CCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCACGGTGTCCCTGCTTTTTCAGGGT AAGAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCC CAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAG GGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGG GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTG ACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGG CGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCT GGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACC CTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTT CCGGGGGGTCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAG GGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCC GGACGGAGATTGGCCCTCGAGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTTG GCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCT TCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAA GGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGT GGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTG CCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGGAAGCCCACCCCAAGATGA GCGCTCTCC
Product
rrn23
Source
RefSeq
Link: