Detail information of JCDBG25290

JCDBG25290
ID
JCDBG25290
Name
LOC105650698
Type
protein_coding
Scaffold
NW_012130064.1
Start
895299
End
897104
Strand
-
Link
Genbank id:105650698 | Jatropha Genome Database ID:Jcr4S03834.10
Molecular function
GO:0003677 | DNA binding
GO:0003700 | transcription factor activity, sequence-specific DNA binding
Cellular component
Biological process
GO:0006355 | regulation of transcription, DNA-templated
KEGG
K12396: Name:AP3D Definition:AP-3 complex subunit delta
Source
Gnomon
TF
ERF
Description
ethylene-responsive
Sequence
TCCAGGAGAAACAGAACACATACAGAGCCTGTCTCTACTACTACTCCTCTTCCTCTACAAATTCTAAAGCGAGAGAGTCA GAGATATAGTCATATAGCTCAAAAAGGGTTATATTTACTTCATCTAATCTGGgtaagaatcaaaattttaaatttgtata aaaatcatttatttcaatCTTAGTTTCtgtttccattttcatttgattattGTTAATCTATCATGCGtgttgttcttttt cttgatttataatcataattttaactattttaggAAATAAATCTCTTTTCGCATCTATTAATTCGTAATAATCAATATAT GTTTTGACTTTCTATGATTCCCTGTTTGCTTCAGACTCCTAAGAAAAACAGAGACAGGAGAAACAGAGAAGTTTCAACTT ATGTCTTGTGGGTTTGATCAGGTAACTGGAGCTACAAAAAAGCTCTGGATCTCTCTACACTGTCTCTGCATAACTCTTTG TCTCTTCTTCACTCTTTGTAAGCAATCTTGGCGCCTTGAGAAAAGCAAGAAACAAACTATTCTGACAATTGTTATACGAT CAAGATCAAAACGGTATGTGGGTTTTacgttttctctctctctttttttttttttttttttttttttttttttttttttt tttttttttttttttcaaattcaaaaaacatAAGAATTGAGAAATATTAGAcatttgtgtttattttgtttattatgttt tttgtGCAGGAATTGTTCTTGGGATTATTGCTGCTTTGAGGATTGTCTAACAAaggatttattattcaaattggGTGTTT TGGGTTTCCTGGTTATCAACGGTTTTTCAAGATTTTCCTTGTCTCCCTTCAGATTCTCTAGTCTTCCTTTGGGATAgtgt ttttctctttaaaaatttcacaGTTTCATACAATGCCAGGACTCAAAAACCCAATGTTGGAtcaaaatttaagtaaaatc aaacaaaacaatttCATTTCAACAAGAAAAGTTCGCATTATATATCATGACCCTGAAGCCACAGATTCATCAagtgatga agatgaagaactCATTAATGGAAGCAGCAAGCGATTATTTGGCAATGGTAAGCGTTTTGTAAGAGAGATTACTCTTTCAA CTATGCAATATGAAACAAGAATTGAGAATTCTTgcaaaaccaaaaccaaaagtaATGTTTATACTAGCACCAAGTTGGGT GACAAGAGAACTCGAATGTGTTCATCTATTTATAAAGGAGTTCGACGAAGGCCATGGGGGAAATATATAGCGGAAATTAG AGATCCAGTTAAAGGGACTAGATTATGGCTTGGTACTTTTGATACCGAGGAGATGGCTGCTGCTGCTTATAGGAAAAAGG AGTTGGAGTTTGAGACGATGATGGTTTCACAAGTTGTATCAGAAGAATCCAATGCTAGTTCTGTTTTGTTTTCTCGTCCA TCGCCATCTTCGGTTCTTGATAATGGAGTTGAAAGTTCGATTAAACAGGAAACTAATATGGAGTATAACGACTATGGTGA CTGTTACTCACAATTTAGTAATGATTTTGGTCAATTCTTTGGTGGTGTCAATGATACCGAGTATTTTTCTGTGCCCGACT GCGAAGGGTTGGTGGATTTTCCATTGTCTGGGATGATTGATCTTCCCAACATTGAACTTGAGAATCTTGATTTGCTGGAG AAAGCTCTCAATTTTACAtaaccaaaatttttgttttgcattTGGGAATTATAGATAGTTATAGGCATGTTTTACAGTAC AGAACAATATTCCAACTTCGGTAAAGTAAAGCTTTTTTCTTGGTTT
Gene structure

JCDB Genes gff download

JCDBG25290 's gene expression heatmap with it's positive (above) and negative (bellow) co-expressed neighbours

Mouse click the small gray square will display sample information.

JCDBG25290's gene network (protein-protein interaction & gene co-expression among this gene and its Top10 neighbors)   

Node color:
Pumpkin: this gene;
Macaroni And Cheese : co-expression gene;
Forest Green :protein-interacting gene ;
Edge color:
Pelorous: co-expression;
Turquoise Blue HueBlue : protein protein interaction;

co-expression network
node1node2typescc
JCDBG25290JCDBG19665co-exp0.791012
JCDBG25290JCDBG18160co-exp0.765271
JCDBG25290JCDBG21965co-exp0.75849
JCDBG25290JCDBG01052co-exp0.752775
JCDBG25290JCDBG19375co-exp0.749275
JCDBG25290JCDBG15613co-exp0.748918
JCDBG25290JCDBG13018co-exp0.744892
JCDBG25290JCDBG09724co-exp0.744811
JCDBG25290JCDBG22971co-exp0.74419
JCDBG25290JCDBG03010co-exp-0.743024
JCDBG19665JCDBG18160co-exp0.73432
JCDBG19665JCDBG21965co-exp0.75081
JCDBG19665JCDBG01052co-exp0.686683
JCDBG19665JCDBG19375co-exp0.750117
JCDBG19665JCDBG15613co-exp0.653766
JCDBG19665JCDBG13018co-exp0.736021
JCDBG19665JCDBG09724co-exp0.684463
JCDBG19665JCDBG22971co-exp0.612284
JCDBG19665JCDBG03010co-exp-0.729381
JCDBG18160JCDBG21965co-exp0.64028
JCDBG18160JCDBG01052co-exp0.785612
JCDBG18160JCDBG19375co-exp0.735422
JCDBG18160JCDBG15613co-exp0.755301
JCDBG18160JCDBG13018co-exp0.703113
JCDBG18160JCDBG09724co-exp0.776644
JCDBG18160JCDBG22971co-exp0.743633
JCDBG18160JCDBG03010co-exp-0.730674
JCDBG21965JCDBG19375co-exp0.652504
JCDBG21965JCDBG15613co-exp0.615305
JCDBG21965JCDBG13018co-exp0.782378
JCDBG21965JCDBG09724co-exp0.631693
JCDBG21965JCDBG22971co-exp0.618206
JCDBG21965JCDBG03010co-exp-0.732755
JCDBG01052JCDBG19375co-exp0.729482
JCDBG01052JCDBG15613co-exp0.764249
JCDBG01052JCDBG13018co-exp0.659072
JCDBG01052JCDBG09724co-exp0.8365
JCDBG01052JCDBG22971co-exp0.764028
JCDBG01052JCDBG03010co-exp-0.758557
JCDBG19375JCDBG15613co-exp0.825711
JCDBG19375JCDBG13018co-exp0.677253
JCDBG19375JCDBG09724co-exp0.770098
JCDBG19375JCDBG22971co-exp0.835741
JCDBG19375JCDBG03010co-exp-0.669992
JCDBG15613JCDBG13018co-exp0.61733
JCDBG15613JCDBG09724co-exp0.778336
JCDBG15613JCDBG22971co-exp0.829187
JCDBG15613JCDBG03010co-exp-0.701835
JCDBG13018JCDBG09724co-exp0.806372
JCDBG13018JCDBG22971co-exp0.626462
JCDBG13018JCDBG03010co-exp-0.81715
JCDBG09724JCDBG22971co-exp0.809035
JCDBG09724JCDBG03010co-exp-0.850093
JCDBG22971JCDBG03010co-exp-0.757131
PPI network
node1node2type
JCDBR33778
ID
JCDBR33778
Name
XM_012237642.1
Type
Scaffold
NW_012130064.1
Start
895299
End
897104
Strand
-
Exon
895299-896376,896533-896751,896974-897104
Sequence
TCCAGGAGAAACAGAACACATACAGAGCCTGTCTCTACTACTACTCCTCTTCCTCTACAAATTCTAAAGCGAGAGAGTCA GAGATATAGTCATATAGCTCAAAAAGGGTTATATTTACTTCATCTAATCTGGgtaagaatcaaaattttaaatttgtata aaaatcatttatttcaatCTTAGTTTCtgtttccattttcatttgattattGTTAATCTATCATGCGtgttgttcttttt cttgatttataatcataattttaactattttaggAAATAAATCTCTTTTCGCATCTATTAATTCGTAATAATCAATATAT GTTTTGACTTTCTATGATTCCCTGTTTGCTTCAGACTCCTAAGAAAAACAGAGACAGGAGAAACAGAGAAGTTTCAACTT ATGTCTTGTGGGTTTGATCAGGTAACTGGAGCTACAAAAAAGCTCTGGATCTCTCTACACTGTCTCTGCATAACTCTTTG TCTCTTCTTCACTCTTTGTAAGCAATCTTGGCGCCTTGAGAAAAGCAAGAAACAAACTATTCTGACAATTGTTATACGAT CAAGATCAAAACGGTATGTGGGTTTTacgttttctctctctctttttttttttttttttttttttttttttttttttttt tttttttttttttttcaaattcaaaaaacatAAGAATTGAGAAATATTAGAcatttgtgtttattttgtttattatgttt tttgtGCAGGAATTGTTCTTGGGATTATTGCTGCTTTGAGGATTGTCTAACAAaggatttattattcaaattggGTGTTT TGGGTTTCCTGGTTATCAACGGTTTTTCAAGATTTTCCTTGTCTCCCTTCAGATTCTCTAGTCTTCCTTTGGGATAgtgt ttttctctttaaaaatttcacaGTTTCATACAATGCCAGGACTCAAAAACCCAATGTTGGAtcaaaatttaagtaaaatc aaacaaaacaatttCATTTCAACAAGAAAAGTTCGCATTATATATCATGACCCTGAAGCCACAGATTCATCAagtgatga agatgaagaactCATTAATGGAAGCAGCAAGCGATTATTTGGCAATGGTAAGCGTTTTGTAAGAGAGATTACTCTTTCAA CTATGCAATATGAAACAAGAATTGAGAATTCTTgcaaaaccaaaaccaaaagtaATGTTTATACTAGCACCAAGTTGGGT GACAAGAGAACTCGAATGTGTTCATCTATTTATAAAGGAGTTCGACGAAGGCCATGGGGGAAATATATAGCGGAAATTAG AGATCCAGTTAAAGGGACTAGATTATGGCTTGGTACTTTTGATACCGAGGAGATGGCTGCTGCTGCTTATAGGAAAAAGG AGTTGGAGTTTGAGACGATGATGGTTTCACAAGTTGTATCAGAAGAATCCAATGCTAGTTCTGTTTTGTTTTCTCGTCCA TCGCCATCTTCGGTTCTTGATAATGGAGTTGAAAGTTCGATTAAACAGGAAACTAATATGGAGTATAACGACTATGGTGA CTGTTACTCACAATTTAGTAATGATTTTGGTCAATTCTTTGGTGGTGTCAATGATACCGAGTATTTTTCTGTGCCCGACT GCGAAGGGTTGGTGGATTTTCCATTGTCTGGGATGATTGATCTTCCCAACATTGAACTTGAGAATCTTGATTTGCTGGAG AAAGCTCTCAATTTTACAtaaccaaaatttttgttttgcattTGGGAATTATAGATAGTTATAGGCATGTTTTACAGTAC AGAACAATATTCCAACTTCGGTAAAGTAAAGCTTTTTTCTTGGTTT
Product
ethylene-responsive transcription factor ERF118-like
Source
Gnomon
Link:
Dbxref=Genbank:XM_012237642.1
JCDBP29709
ID
JCDBP29709
Parent
JCDBR33778
Name
XP_012093032.1
Scaffold
NW_012130064.1
CDS
895405-896193
Strand:
-
Sequence
MPGLKNPMLDQNLSKIKQNNFISTRKVRIIYHDPEATDSSSDEDEELINGSSKRLFGNGKRFVREITLSTMQYETRIENS CKTKTKSNVYTSTKLGDKRTRMCSSIYKGVRRRPWGKYIAEIRDPVKGTRLWLGTFDTEEMAAAAYRKKELEFETMMVSQ VVSEESNASSVLFSRPSPSSVLDNGVESSIKQETNMEYNDYGDCYSQFSNDFGQFFGGVNDTEYFSVPDCEGLVDFPLSG MIDLPNIELENLDLLEKALNFT
Product
ethylene-responsive transcription factor ERF118-like
Source
Gnomon
Link
XP_012093032.1
InterProScan
IPR001471 AP2/ERF domain
IPR016177 DNA-binding domain
IPR017392 AP2/ERF transcription factor ERF/PTI6
Pfam
PF00847.16 AP2 Domain